Whole Genome Sequencing and Assembly - SRA

SRX109803: Whole Genome Sequencing and Assembly
12 PACBIO_SMRT (PacBio RS) runs: 980,892 spots, 920.5M bases, 3.9Gb downloads

UUID: 65b83709-5d38-452a-be3a-e176e99e21ac

Design: Fragment library

Submitted by: Broad Institute (BI)

Study: Reference genome for the Human Microbiome Project

PRJNA52149 • SRP006189 • All experiments • All runs

show Abstracthide Abstract

Reference genome for the Human Microbiome Project Another assembly of this organism was generated independently from the HMP reference genome, using PacBio and Illumina sequence reads.

Sample: Generic sample from Klebsiella oxytoca 10-5248

SAMN00254037 • SRS183306 • All experiments • All runs

Organism: Klebsiella oxytoca 10-5248

Library:

Name: LR_85_Koxytoca

Instrument: PacBio RS

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Construction protocol: Pacific Biosciences

Spot descriptor:

1 forward

Experiment attributes: (show all 13 attributes...) (hide...)

gssr_id: 76541.3

lsid: BROAD:SEQUENCING_SAMPLE:76541.3

material_type: Genomic DNA

pacbio_rs_binding_kit: DNA/Polymerase Binding Kit 1.0 (24 rxn)

pacbio_rs_binding_kit_barcode: 110125001359802061511

pacbio_rs_template_prep_kit: DNA Template Prep Kit 1.0 (10 ug)

pacbio_rs_template_prep_kit_barcode: 110128001322716102811

project: G13246

sequencing_protocol: Standard Sequencing

template_preparation_adaptor_sequence: ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT

template_preparation_kit_insert_size: 2000

used_binding_kit_control: true

work_request: 25346

Pipeline: show...hide...

Name	Step	Program	Version
2011-04-22 19:39:44.0	Instrument Control Version	1.2.0.1.81002
base caller	2011-04-23 13:23:14.0	Primary Analysis	[email protected]:8082, SwVer=1201.81002, HwVer=1.0

Runs: 12 runs, 980,892 spots, 920.5M bases, 3.9Gb

Run	# of Spots	# of Bases	Size	Published
SRR386070	81,741	106.8M	459Mb	2011-12-01
SRR386089	81,741	90.3M	390.7Mb	2011-12-01
SRR386090	81,741	67.6M	296.1Mb	2011-12-01
SRR386093	81,741	76.6M	333Mb	2011-12-01
SRR386094	81,741	102.7M	441.5Mb	2011-12-01
SRR386105	81,741	65M	286.1Mb	2011-12-01
SRR386106	81,741	110.7M	475.9Mb	2011-12-01
SRR386108	81,741	77.5M	336.8Mb	2011-12-01
SRR386109	81,741	57.7M	253.5Mb	2011-12-01
SRR386111	81,741	50.8M	223Mb	2011-12-01
SRR386112	81,741	52.1M	229.2Mb	2011-12-01
SRR386115	81,741	62.7M	275.3Mb	2011-12-01

ID:: 127080

SRA

Sequence Read Archive

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